This is the special double CD edition with all the B-sides plus a limited edition DVD.
| Disc 1 (The Best of 1990-2000 - Disc 1) |
| 1. Even Better Than the Real Thing |
| 2. Mysterious Ways |
| 3. Beautiful Day |
| 4. Electrical Storm [William Orbit Mix] |
| 5. One |
| 6. Miss Sarajevo - Luciano Pavarotti, U2 |
| 7. Stay (Faraway, So Close!) |
| 8. Stuck in a Moment You Can't Get Out Of |
| 9. Gone [New Mix] |
| 10. Until the End of the World |
| 11. Hands That Built America [From Gangs of New York] |
| 12. Discothe [New Mix] |
| 13. Hold Me, Thrill Me, Kiss Me, Kill Me |
| 14. Staring at the Sun [New Mix] |
| 15. Numb [New Mix] |
| 16. First Time |
| Disc 2 (The Best of 1990-2000 - Disc 2) |
| 1. Lady With the Spinning Head [Extended Dance Mix] |
| 2. Dirty Day [Junk Day Mix] |
| 3. Summer Rain |
| 4. Electrical Storm |
| 5. North and South of the River |
| 6. Your Blue Room |
| 7. Happiness Is a Warm Gun [The Gun Mix] |
| 8. Salome [Zooromancer Remix] |
| 9. Even Better Than the Real Thing [The Perfecto Remix] |
| 10. Numb [Gimme Some More Dignity Mix] |
| 11. Mysterious Ways [Solar Plexus Club Mix] |
| 12. If God Will Send His Angels [Big Yam Mix] |
| 13. Lemon [Jeep Mix] |
| 14. Discothe [Hexidecimal Mix] |
| Disc 3 (The Best of 1990-2000 - Disc 3) |
| 1. History Mix [DVD] |
| 2. Best of 1990-2000 DVD Trailer |
| 3. Please [DVD][Live] |
| 4. Beautiful Day [DVD][Version] |
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